Leeds official Mickey Vann has taken charge of Hatton's last six fights and Magee is incensed that he will again be the man in the middle at the MEN Arena on Saturday.
It is an unprecedented situation at any level and means Hatton will have had the same referee for all seven of his WBU title bouts.
"I think it's a shambles that he's been allowed to referee seven consecutive world title fights for Ricky Hatton alone," blasted Magee.
"I think it's scandalous.
"I was hoping it was going to be something like a South African, but definitely not an English referee and definitely not Mickey Vann.
"I think he has jumped in to stop some of Hatton's previous contests a little too quickly when he shouldn't have jumped in.
"Obviously, I'm a counter-puncher and so I'll be letting Ricky lead off and hope I can counter-attack.
"So obviously the referee will have to be told about that before the fight, as I don't want him stepping in just because I'm backed up on the ropes.
"If we thought we could get a change, we would certainly accept it. It's the joke of the year."
Magee's manager Mike Callahan added: "I'll also be having a word with Mickey Vann about premature stoppages and constant clubbing to the back of the neck."
The Irishman's trainer John Breen is also angry with the choice of referee.
"When Eamonn fought on the same bill as Ricky in February, I was talking to the WBU officials afterwards and they were saying it was a disgrace that Mickey Vann was referee and that was the sixth time," said Breen.
"But as long as Mickey Vann can count to 10 in the normal way when Eamonn knocks Ricky down, that's all that matters.
"As long as he doesn't take 10 minutes to get from one to two."
Callahan also revealed that he has already taken steps to have the judges for the fight changed.
Officials from America, South Africa and Australia will now score the contest after it is believed Callahan asked for two English judges to be replaced.
"I must admit I did have a showdown with the WBU and to their credit, they did make changes," said Callahan.
Magee, however, still believes he has little chance of winning on points in front of Hatton's home crowd.
The 30-year-old has already been on the wrong end of one awful decision in Manchester, going down to Burnley's Paul Burke for the Commonwealth title in November 1998.
"I'm still convinced that if I win 12 consecutive rounds, I still won't get the decision," said Magee.
"That means I've got to go in there and stop him at all costs."