Lee Frecklington's goal kept Lincoln among the League Two leaders.
City were denied a goal in the 18th minute when a header from Adie Moses was cleared off the line by Barnet skipper Andy Hessenthaler.
The Imps edged in front six minutes into the second half when midfielder Frecklington fired into the top corner after beating three Barnet defenders.
The Bees were unlucky not to equalise when Ollie Allen saw his 25-yard lob brilliantly saved by Alan Marriott.
Lincoln City: Marriott, Eaden, Moses, Brown, Green, Amoo, Frecklington (Mayo 86), Kerr, Hughes (Beevers 79), N'Guessan (Weir-Daley 63), Mendes.
Subs Not Used: Olejnik, Warlow.
Goals: Frecklington 51.
Barnet: Flitney, Devera, Yakubu, Gross (Graham 86), King, Cogan (Bailey 71), Hessenthaler, Puncheon, Sinclair, Birchall, Allen (Hatch 77).
Subs Not Used: Harrison, Hendon.
Booked: Devera.
Att: 4,339
Referee:C Oliver (Northumberland).
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