Gillingham were relegated to League Two after Leeds came from behind to defeat them and Cheltenham beat Doncaster.
The visitors made a good start and were ahead when Simeon Jackson pounced on a poor pass back from Paul Huntington, cut inside and fired into the corner.
However, superb work from Seb Carole on the right allowed Brad Johnson to volley in the equaliser in style.
And Tresor Kandol sealed the Gills' fate and secured fifth for Leeds when he finished coolly in the 88th minute.
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