Announcing the ban's end, Sally Dewar of the FSA, said: "We believe that these proposals are the right measures for maintaining orderly markets.
"Continuing the disclosure obligations as we propose will reduce the potential for abusive behaviour and disorderly markets," she said.
Rules changes
The financial watchdog has already scrapped rules which required automatic daily disclosure of short trading positions by investors, regardless of whether there had been a change in the position.
The regulator had been urged to maintain the ban on short-selling, given the continuing problems in the stock market and as bank shares continue to slide.
Last week, Liberal Democrat Treasury spokesman Vince Cable joined some MPs in asking for an extension to the ban, or at least for it to be maintained for banking stocks.
When the ban was introduced, FSA chief executive Hector Sants said that while short-selling was a legitimate investment technique in normal market conditions, the "current extreme circumstances" had given rise to "disorderly markets".
Short-selling was also blamed for steep falls in HBOS shares and trading in the stock was subject to an FSA investigation last year.
Yet the regulator found no evidence that rumours were spread about the bank in a bid to manipulate its share price.
The industry body for the hedge fund industry, Aima, welcomed the proposals to lift the ban.
Chief executive Andrew Baker said: "Although we naturally support efforts by policymakers and regulators to achieve stability in markets, particularly during emergency conditions, we do not feel that this ban achieved its stated aims."
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